Helpful Links

Microbiome analysis tutorials

– Exploratory analysis of 16S rRNA gene amplicon sequencing data by Kiana West

– Discovering Patterns in the Microbiome by Dan Knights

Microbiome resources

– Microbiome Digest by Elisabeth Bik

– curatedMetagenomicData : “Uniformly processed and manually annotated human microbiome profiles for thousands of people”

– “154,723 microbial genomes assembled from 9,428 samples of the human microbiome”

– Biobakery: tools for meta’omic profiling

Programming

https://swcarpentry.github.io/shell-novice/

http://swcarpentry.github.io/python-novice-inflammation/

http://swcarpentry.github.io/r-novice-inflammation/

Useful bash one-liners by Stephen Turner

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