Microbiome analysis tutorials
– Tutorial by Kiana West
– Tutorial by Dan Knights
Microbiome resources
– Blog by Elisabeth Bik
– curatedMetagenomicData : “uniformly processed and manually annotated human microbiome profiles for thousands of people”
– “154,723 microbial genomes assembled from 9,428 samples of the human microbiome”
– Biobakery: tools for meta’omic profiling
Programming
https://swcarpentry.github.io/shell-novice/
http://swcarpentry.github.io/python-novice-inflammation/
http://swcarpentry.github.io/r-novice-inflammation/
Useful bash one-liners by Stephen Turner
