Microbiome
Nice tutorial by Kiana West:
https://ka-west.github.io/SCC-tutorials/tutorials/16S_exploratory.html
– curatedMetagenomicData : “uniformly processed and manually annotated human microbiome profiles for thousands of people”
– “154,723 microbial genomes assembled from 9,428 samples of the human microbiome”
Nice blog by Elisabeth Bik:
Nice tutorial by Dan Knights:
http://metagenome.cs.umn.edu/microbiomecodebrowser/doc/index.html
Programming
https://swcarpentry.github.io/shell-novice/
http://swcarpentry.github.io/python-novice-inflammation/
http://swcarpentry.github.io/r-novice-inflammation/
Useful bash one-liners by Stephen Turner
